IL_6GZZ_159

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

UGACC*GGG

Length

8 nucleotides

Bulged bases

6GZZ|1|A3|G|123, 6GZZ|1|A3|A|124

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_159 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.5604

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6GZZ|1|A3|U|122
6GZZ|1|A3|G|123
6GZZ|1|A3|A|124
6GZZ|1|A3|C|125
6GZZ|1|A3|C|126
*
6GZZ|1|A3|G|225
6GZZ|1|A3|G|226
6GZZ|1|A3|G|227

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain P3

30S ribosomal protein S16

Chain Q3

30S ribosomal protein S17

Chain T3

30S ribosomal protein S20