IL_6GZZ_177

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_177 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.1856

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6GZZ|1|A3|G|864
6GZZ|1|A3|G|865
6GZZ|1|A3|A|866
6GZZ|1|A3|G|867
6GZZ|1|A3|U|868
6GZZ|1|A3|A|869
6GZZ|1|A3|C|870
6GZZ|1|A3|G|871
*
6GZZ|1|A3|U|882
6GZZ|1|A3|G|883
6GZZ|1|A3|A|884
6GZZ|1|A3|A|885
6GZZ|1|A3|A|886
6GZZ|1|A3|C|887

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain L3

30S ribosomal protein S12

Chain Q3

30S ribosomal protein S17