IL_6GZZ_186

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGUCAC*GAAGUCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_186 not in the Motif Atlas

Homologous match to IL_6CZR_369

Geometric discrepancy: 0.4923

The information below is about IL_6CZR_369

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71294.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6GZZ|1|A3|C|1386
6GZZ|1|A3|G|1387
6GZZ|1|A3|U|1388
6GZZ|1|A3|C|1389
6GZZ|1|A3|A|1390
6GZZ|1|A3|C|1391
*
6GZZ|1|A3|G|1468
6GZZ|1|A3|A|1469
6GZZ|1|A3|A|1470
6GZZ|1|A3|G|1471
6GZZ|1|A3|U|1472
6GZZ|1|A3|C|1473
6GZZ|1|A3|G|1474

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain L3

30S ribosomal protein S12

Chain V3

Ribosome hibernation promoting factor