IL_6GZZ_189

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGUGAA*UUACC

Length

11 nucleotides

Bulged bases

6GZZ|1|A4|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_189 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2916

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6GZZ|1|A4|G|28
6GZZ|1|A4|G|29
6GZZ|1|A4|U|30
6GZZ|1|A4|G|31
6GZZ|1|A4|A|32
6GZZ|1|A4|A|33
*
6GZZ|1|A4|U|534
6GZZ|1|A4|U|535
6GZZ|1|A4|A|536
6GZZ|1|A4|C|537
6GZZ|1|A4|C|538

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain D4

30S ribosomal protein S4

Chain L4

30S ribosomal protein S12