IL_6GZZ_198

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_198 not in the Motif Atlas

Homologous match to IL_6CZR_132

Geometric discrepancy: 0.2525

The information below is about IL_6CZR_132

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.3

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6GZZ|1|A4|C|487
6GZZ|1|A4|G|488
6GZZ|1|A4|G|489
6GZZ|1|A4|C|490
6GZZ|1|A4|C|491
6GZZ|1|A4|A|492
6GZZ|1|A4|A|493
6GZZ|1|A4|C|494
*
6GZZ|1|A4|G|523
6GZZ|1|A4|G|524

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain D4

30S ribosomal protein S4

Chain E4

30S ribosomal protein S5

Chain L4

30S ribosomal protein S12