IL_6GZZ_200

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6GZZ|1|A4|G|553, 6GZZ|1|A4|U|554, 6GZZ|1|A4|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_200 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.2832

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

6GZZ|1|A4|C|552
6GZZ|1|A4|G|553
6GZZ|1|A4|U|554
6GZZ|1|A4|A|555
6GZZ|1|A4|A|556
6GZZ|1|A4|A|557
6GZZ|1|A4|G|558
*
6GZZ|1|A4|C|857
6GZZ|1|A4|G|858

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain L4

30S ribosomal protein S12

Chain Q4

30S ribosomal protein S17