IL_6GZZ_207

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_207 not in the Motif Atlas

Geometric match to IL_4LFB_033

Geometric discrepancy: 0.2073

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6GZZ|1|A4|C|762
6GZZ|1|A4|A|763
6GZZ|1|A4|A|764
6GZZ|1|A4|A|765
6GZZ|1|A4|C|766
*
6GZZ|1|A4|G|782
6GZZ|1|A4|G|783
6GZZ|1|A4|U|784
6GZZ|1|A4|A|785
6GZZ|1|A4|G|786

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain K4

30S ribosomal protein S11