IL_6GZZ_208
3D structure
- PDB id
- 6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (amc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.13 Å
Loop
- Sequence
- GGAGUACGG*CUGAAAC
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZZ_208 not in the Motif Atlas
- Homologous match to IL_6CZR_146
- Geometric discrepancy: 0.1944
- The information below is about IL_6CZR_146
- Detailed Annotation
- 9x7 Sarcin-Ricin with inserted C; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_68633.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
6GZZ|1|A4|G|864
6GZZ|1|A4|G|865
6GZZ|1|A4|A|866
6GZZ|1|A4|G|867
6GZZ|1|A4|U|868
6GZZ|1|A4|A|869
6GZZ|1|A4|C|870
6GZZ|1|A4|G|871
6GZZ|1|A4|G|872
*
6GZZ|1|A4|C|881
6GZZ|1|A4|U|882
6GZZ|1|A4|G|883
6GZZ|1|A4|A|884
6GZZ|1|A4|A|885
6GZZ|1|A4|A|886
6GZZ|1|A4|C|887
Current chains
- Chain A4
- 16S ribosomal RNA
Nearby chains
- Chain L4
- 30S ribosomal protein S12
- Chain Q4
- 30S ribosomal protein S17
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