IL_6GZZ_214

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6GZZ|1|A4|C|1382, 6GZZ|1|A4|A|1480

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_214 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.338

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6GZZ|1|A4|C|1381
6GZZ|1|A4|C|1382
6GZZ|1|A4|G|1383
*
6GZZ|1|A4|C|1478
6GZZ|1|A4|A|1479
6GZZ|1|A4|A|1480
6GZZ|1|A4|G|1481

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain E4

30S ribosomal protein S5

Chain V4

Ribosome hibernation promoting factor