IL_6GZZ_248

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

6GZZ|1|A2|G|979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_248 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.5618

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6GZZ|1|A2|C|893
6GZZ|1|A2|G|894
6GZZ|1|A2|C|895
6GZZ|1|A2|U|896
6GZZ|1|A2|G|897
6GZZ|1|A2|A|898
6GZZ|1|A2|C|899
*
6GZZ|1|A2|G|975
6GZZ|1|A2|G|976
6GZZ|1|A2|U|977
6GZZ|1|A2|G|978
6GZZ|1|A2|G|979
6GZZ|1|A2|A|980
6GZZ|1|A2|G|981

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain Y2

50S ribosomal protein L30