3D structure

PDB id
6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
T. thermophilus hibernating 100S ribosome (amc)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.13 Å

Loop

Sequence
UGAC*GG
Length
6 nucleotides
Bulged bases
6GZZ|1|A3|G|123
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GZZ_272 not in the Motif Atlas
Homologous match to IL_6CZR_119
Geometric discrepancy: 0.228
The information below is about IL_6CZR_119
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_33761.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
4

Unit IDs

6GZZ|1|A3|U|122
6GZZ|1|A3|G|123
6GZZ|1|A3|A|124
6GZZ|1|A3|C|125
*
6GZZ|1|A3|G|226
6GZZ|1|A3|G|227

Current chains

Chain A3
16S ribosomal RNA

Nearby chains

Chain P3
30S ribosomal protein S16
Chain Q3
30S ribosomal protein S17
Chain T3
30S ribosomal protein S20

Coloring options:


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