IL_6GZZ_284

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_284 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.2384

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6GZZ|1|A3|G|757
6GZZ|1|A3|G|758
6GZZ|1|A3|G|759
6GZZ|1|A3|A|760
6GZZ|1|A3|G|761
*
6GZZ|1|A3|U|787
6GZZ|1|A3|C|788

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain C1

50S ribosomal protein L2

Chain K3

30S ribosomal protein S11