IL_6GZZ_307

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

6GZZ|1|A1|U|98, 6GZZ|1|A1|G|99

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_307 not in the Motif Atlas

Homologous match to IL_4WF9_004

Geometric discrepancy: 0.4554

The information below is about IL_4WF9_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6GZZ|1|A1|G|80
6GZZ|1|A1|G|81
6GZZ|1|A1|G|82
6GZZ|1|A1|A|83
6GZZ|1|A1|G|84
*
6GZZ|1|A1|C|96
6GZZ|1|A1|G|97
6GZZ|1|A1|U|98
6GZZ|1|A1|G|99
6GZZ|1|A1|G|100
6GZZ|1|A1|A|101
6GZZ|1|A1|U|102
6GZZ|1|A1|C|103

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain T1

50S ribosomal protein L24

Chain X1

50S ribosomal protein L29