IL_6GZZ_322

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGGGAG*CGUGGAUCC

Length

15 nucleotides

Bulged bases

6GZZ|1|A2|U|98, 6GZZ|1|A2|G|99

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_322 not in the Motif Atlas

Geometric match to IL_4LFB_031

Geometric discrepancy: 0.3116

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

6GZZ|1|A2|G|79
6GZZ|1|A2|G|80
6GZZ|1|A2|G|81
6GZZ|1|A2|G|82
6GZZ|1|A2|A|83
6GZZ|1|A2|G|84
*
6GZZ|1|A2|C|96
6GZZ|1|A2|G|97
6GZZ|1|A2|U|98
6GZZ|1|A2|G|99
6GZZ|1|A2|G|100
6GZZ|1|A2|A|101
6GZZ|1|A2|U|102
6GZZ|1|A2|C|103
6GZZ|1|A2|C|104

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain T2

50S ribosomal protein L24

Chain X2

50S ribosomal protein L29