IL_6GZZ_337

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

6GZZ|1|A2|A|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_337 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.2623

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6GZZ|1|A2|G|2752
6GZZ|1|A2|A|2753
6GZZ|1|A2|U|2754
6GZZ|1|A2|A|2755
6GZZ|1|A2|A|2756
6GZZ|1|A2|C|2757
*
6GZZ|1|A2|G|2777
6GZZ|1|A2|G|2778
6GZZ|1|A2|A|2779
6GZZ|1|A2|A|2780
6GZZ|1|A2|G|2781
6GZZ|1|A2|C|2782

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain G2

50S ribosomal protein L6

Chain I2

50S ribosomal protein L13

Chain e2

50S ribosomal protein L36