IL_6H4N_100

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6H4N|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H4N_100 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0948

The information below is about IL_5J7L_345

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.2

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6H4N|1|A|C|2636
6H4N|1|A|U|2637
6H4N|1|A|G|2638
6H4N|1|A|A|2639
6H4N|1|A|G|2640
*
6H4N|1|A|C|2774
6H4N|1|A|G|2775
6H4N|1|A|A|2776
6H4N|1|A|G|2777
6H4N|1|A|A|2778
6H4N|1|A|U|2779
6H4N|1|A|G|2780
6H4N|1|A|A|2781
6H4N|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13