IL_6H58_021

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

6H58|1|A|G|776, 6H58|1|A|A|788, 6H58|1|A|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_021 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0466

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6H58|1|A|G|775
6H58|1|A|G|776
6H58|1|A|G|777
*
6H58|1|A|C|787
6H58|1|A|A|788
6H58|1|A|A|789
6H58|1|A|U|790
6H58|1|A|C|791

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain E

50S ribosomal protein L4

Chain S

50S ribosomal protein L22