IL_6H58_068

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6H58|1|A|A|1801, 6H58|1|A|C|1816, 6H58|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_068 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.0954

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6H58|1|A|U|1798
6H58|1|A|G|1799
6H58|1|A|C|1800
6H58|1|A|A|1801
6H58|1|A|A|1802
6H58|1|A|A|1803
6H58|1|A|C|1804
*
6H58|1|A|G|1813
6H58|1|A|G|1814
6H58|1|A|A|1815
6H58|1|A|C|1816
6H58|1|A|G|1817
6H58|1|A|U|1818
6H58|1|A|A|1819
6H58|1|A|U|1820
6H58|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA