IL_6H58_129

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_129 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0864

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6H58|1|AA|U|703
6H58|1|AA|G|704
6H58|1|AA|A|705
6H58|1|AA|A|706
6H58|1|AA|G|707
*
6H58|1|AA|U|724
6H58|1|AA|G|725
6H58|1|AA|G|726
6H58|1|AA|A|727
6H58|1|AA|G|728

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L2