IL_6H58_137

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_137 not in the Motif Atlas

Geometric match to IL_5J7L_272

Geometric discrepancy: 0.1222

The information below is about IL_5J7L_272

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6H58|1|AA|G|864
6H58|1|AA|C|865
6H58|1|AA|A|866
6H58|1|AA|C|867
6H58|1|AA|U|868
*
6H58|1|AA|A|909
6H58|1|AA|A|910
6H58|1|AA|A|911
6H58|1|AA|C|912

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain MM

50S ribosomal protein L16