IL_6H58_143

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_143 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.064

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6H58|1|AA|U|1004
6H58|1|AA|C|1005
6H58|1|AA|C|1006
6H58|1|AA|C|1007
6H58|1|AA|A|1008
6H58|1|AA|A|1009
6H58|1|AA|A|1010
6H58|1|AA|G|1011
*
6H58|1|AA|C|1150
6H58|1|AA|A|1151

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain JJ

50S ribosomal protein L13

Chain QQ

50S ribosomal protein L20