IL_6H58_154

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6H58|1|AA|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_154 not in the Motif Atlas

Geometric match to IL_5J7L_288

Geometric discrepancy: 0.093

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6H58|1|AA|C|1208
6H58|1|AA|U|1209
6H58|1|AA|G|1210
6H58|1|AA|C|1211
6H58|1|AA|G|1212
6H58|1|AA|A|1213
6H58|1|AA|A|1214
6H58|1|AA|G|1215
*
6H58|1|AA|U|1234
6H58|1|AA|G|1235
6H58|1|AA|G|1236
6H58|1|AA|A|1237
6H58|1|AA|G|1238

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain QQ

50S ribosomal protein L20