IL_6H58_171

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GAA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_171 not in the Motif Atlas

Geometric match to IL_5J7L_305

Geometric discrepancy: 0.14

The information below is about IL_5J7L_305

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_67095.2

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

6H58|1|AA|G|1663
6H58|1|AA|A|1664
6H58|1|AA|A|1665
*
6H58|1|AA|U|1995
6H58|1|AA|C|1996
6H58|1|AA|C|1997

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain KK

50S ribosomal protein L14

Chain PP

50S ribosomal protein L19