IL_6H58_173

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

6H58|1|AA|G|1992

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_173 not in the Motif Atlas

Geometric match to IL_4WF9_065

Geometric discrepancy: 0.0968

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6H58|1|AA|A|1669
6H58|1|AA|C|1670
6H58|1|AA|U|1671
6H58|1|AA|A|1672
6H58|1|AA|G|1673
6H58|1|AA|G|1674
*
6H58|1|AA|C|1990
6H58|1|AA|U|1991
6H58|1|AA|G|1992
6H58|1|AA|U|1993

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain KK

50S ribosomal protein L14