IL_6H58_179

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

6H58|1|AA|C|1838

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_179 not in the Motif Atlas

Geometric match to IL_1U9S_005

Geometric discrepancy: 0.1309

The information below is about IL_1U9S_005

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_55206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

6H58|1|AA|C|1837
6H58|1|AA|C|1838
6H58|1|AA|G|1839
6H58|1|AA|G|1840
*
6H58|1|AA|C|1902
6H58|1|AA|G|1903

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L2

Chain aa

Small subunit ribosomal RNA; SSU rRNA