IL_6H58_187

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GUAA*UCC

Length

7 nucleotides

Bulged bases

6H58|1|AA|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_187 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1206

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6H58|1|AA|G|2067
6H58|1|AA|U|2068
6H58|1|AA|A|2069
6H58|1|AA|A|2070
*
6H58|1|AA|U|2441
6H58|1|AA|C|2442
6H58|1|AA|C|2443

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain EE

50S ribosomal protein L4

Chain LL

50S ribosomal protein L15