3D structure

PDB id
6H58 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
7.9 Å

Loop

Sequence
GUUGC*GAACUC
Length
11 nucleotides
Bulged bases
6H58|1|a|U|1126
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6H58_281 not in the Motif Atlas
Geometric match to IL_5J7L_051
Geometric discrepancy: 0.1307
The information below is about IL_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06691.1
Basepair signature
cWW-cWS-L-R-L-R-cWW-L
Number of instances in this motif group
2

Unit IDs

6H58|1|a|G|1124
6H58|1|a|U|1125
6H58|1|a|U|1126
6H58|1|a|G|1127
6H58|1|a|C|1128
*
6H58|1|a|G|1144
6H58|1|a|A|1145
6H58|1|a|A|1146
6H58|1|a|C|1147
6H58|1|a|U|1148
6H58|1|a|C|1149

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain i
30S ribosomal protein S9
Chain j
30S ribosomal protein S10

Coloring options:


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