IL_6H58_305

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GAAA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_305 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.1225

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6H58|1|aa|G|128
6H58|1|aa|A|129
6H58|1|aa|A|130
6H58|1|aa|A|131
*
6H58|1|aa|U|231
6H58|1|aa|G|232
6H58|1|aa|C|233

Current chains

Chain aa

16S ribosomal RNA

Nearby chains

Chain pp

30S ribosomal protein S16

Chain qq

30S ribosomal protein S17

Chain tt

30S ribosomal protein S20