IL_6H58_310

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

6H58|1|aa|U|244, 6H58|1|aa|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_310 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1063

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6H58|1|aa|G|242
6H58|1|aa|A|243
6H58|1|aa|U|244
6H58|1|aa|U|245
6H58|1|aa|A|246
6H58|1|aa|G|247
*
6H58|1|aa|C|277
6H58|1|aa|G|278
6H58|1|aa|A|279
6H58|1|aa|C|280
6H58|1|aa|G|281
6H58|1|aa|A|282
6H58|1|aa|U|283
6H58|1|aa|C|284

Current chains

Chain aa

16S ribosomal RNA

Nearby chains

Chain ll

30S ribosomal protein S12

Chain qq

30S ribosomal protein S17