IL_6H58_317

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_317 not in the Motif Atlas

Homologous match to IL_5J7L_021

Geometric discrepancy: 0.1486

The information below is about IL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33323.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6H58|1|aa|C|440
6H58|1|aa|A|441
6H58|1|aa|G|442
*
6H58|1|aa|C|492
6H58|1|aa|A|493
6H58|1|aa|G|494
6H58|1|aa|A|495
6H58|1|aa|A|496
6H58|1|aa|G|497

Current chains

Chain aa

16S ribosomal RNA

Nearby chains

Chain dd

30S ribosomal protein S4