IL_6H58_329

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

6H58|1|aa|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_329 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.072

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6H58|1|aa|U|662
6H58|1|aa|A|663
6H58|1|aa|G|664
6H58|1|aa|A|665
6H58|1|aa|G|666
*
6H58|1|aa|U|740
6H58|1|aa|G|741
6H58|1|aa|G|742
6H58|1|aa|A|743

Current chains

Chain aa

16S ribosomal RNA

Nearby chains

Chain ff

30S ribosomal protein S6

Chain oo

30S ribosomal protein S15

Chain rr

30S ribosomal protein S18