IL_6H58_337

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

6H58|1|aa|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_337 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1166

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6H58|1|aa|G|933
6H58|1|aa|C|934
6H58|1|aa|A|935
*
6H58|1|aa|U|1380
6H58|1|aa|U|1381
6H58|1|aa|C|1382
6H58|1|aa|C|1383
6H58|1|aa|C|1384

Current chains

Chain aa

16S ribosomal RNA

Nearby chains

Chain gg

30S ribosomal protein S7

Chain ii

30S ribosomal protein S9

Chain vv

Ribosome modulation factor

Chain ww

Transfer RNA; tRNA

Chain xx

Ribosome hibernation promoting factor