IL_6H58_339

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_339 not in the Motif Atlas

Geometric match to IL_5J7L_043

Geometric discrepancy: 0.1504

The information below is about IL_5J7L_043

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6H58|1|aa|G|993
6H58|1|aa|A|994
6H58|1|aa|C|995
6H58|1|aa|A|996
6H58|1|aa|U|997
*
6H58|1|aa|A|1044
6H58|1|aa|C|1045

Current chains

Chain aa

16S ribosomal RNA

Nearby chains

Chain nn

30S ribosomal protein S14