IL_6H58_353

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_353 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1083

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6H58|1|aa|C|1303
6H58|1|aa|G|1304
6H58|1|aa|G|1305
6H58|1|aa|A|1306
6H58|1|aa|U|1307
6H58|1|aa|U|1308
*
6H58|1|aa|A|1329
6H58|1|aa|U|1330
6H58|1|aa|G|1331
6H58|1|aa|A|1332
6H58|1|aa|A|1333
6H58|1|aa|G|1334

Current chains

Chain aa

16S ribosomal RNA

Nearby chains

Chain mm

30S ribosomal protein S13

Chain ss

30S ribosomal protein S19