IL_6HA1_018

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6HA1|1|A|G|848, 6HA1|1|A|G|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_018 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0889

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6HA1|1|A|G|721
6HA1|1|A|A|722
6HA1|1|A|A|723
6HA1|1|A|A|724
6HA1|1|A|C|725
*
6HA1|1|A|G|846
6HA1|1|A|A|847
6HA1|1|A|G|848
6HA1|1|A|A|849
6HA1|1|A|U|850
6HA1|1|A|A|851
6HA1|1|A|G|852
6HA1|1|A|C|853

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15