IL_6HA1_044

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6HA1|1|A|U|1251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_044 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1064

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6HA1|1|A|C|1248
6HA1|1|A|U|1249
6HA1|1|A|G|1250
6HA1|1|A|U|1251
6HA1|1|A|G|1252
6HA1|1|A|A|1253
6HA1|1|A|A|1254
6HA1|1|A|G|1255
*
6HA1|1|A|U|1274
6HA1|1|A|G|1275
6HA1|1|A|G|1276
6HA1|1|A|A|1277
6HA1|1|A|G|1278

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20