IL_6HA1_053

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAUG*CUAG

Length

9 nucleotides

Bulged bases

6HA1|1|A|U|1466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_053 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.2869

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6HA1|1|A|C|1463
6HA1|1|A|A|1464
6HA1|1|A|A|1465
6HA1|1|A|U|1466
6HA1|1|A|G|1467
*
6HA1|1|A|C|1625
6HA1|1|A|U|1626
6HA1|1|A|A|1627
6HA1|1|A|G|1628

Current chains

Chain A

23S ribosomal RNA

Nearby chains