IL_6HA1_055

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUAG*UGAUU

Length

9 nucleotides

Bulged bases

6HA1|1|A|U|1602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_055 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.2139

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6HA1|1|A|A|1483
6HA1|1|A|U|1484
6HA1|1|A|A|1485
6HA1|1|A|G|1486
*
6HA1|1|A|U|1599
6HA1|1|A|G|1600
6HA1|1|A|A|1601
6HA1|1|A|U|1602
6HA1|1|A|U|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains