IL_6HA1_057

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*UGAUG

Length

9 nucleotides

Bulged bases

6HA1|1|A|U|1570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_057 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.2542

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6HA1|1|A|C|1515
6HA1|1|A|A|1516
6HA1|1|A|A|1517
6HA1|1|A|G|1518
*
6HA1|1|A|U|1567
6HA1|1|A|G|1568
6HA1|1|A|A|1569
6HA1|1|A|U|1570
6HA1|1|A|G|1571

Current chains

Chain A

23S ribosomal RNA

Nearby chains