IL_6HA1_074

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_074 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1331

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6HA1|1|A|A|1885
6HA1|1|A|G|1886
6HA1|1|A|G|1887
6HA1|1|A|A|1888
6HA1|1|A|G|1889
*
6HA1|1|A|C|1911
6HA1|1|A|G|1912
6HA1|1|A|A|1913
6HA1|1|A|A|1914
6HA1|1|A|U|1915

Current chains

Chain A

23S ribosomal RNA

Nearby chains