IL_6HA1_101

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_101 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.1265

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6HA1|1|A|U|2681
6HA1|1|A|U|2682
6HA1|1|A|A|2683
6HA1|1|A|G|2684
6HA1|1|A|U|2685
6HA1|1|A|A|2686
6HA1|1|A|C|2687
*
6HA1|1|A|G|2692
6HA1|1|A|G|2693
6HA1|1|A|A|2694
6HA1|1|A|C|2695
6HA1|1|A|C|2696
6HA1|1|A|G|2697

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6