IL_6HA1_153

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

6HA1|1|a|C|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_153 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.181

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6HA1|1|a|G|943
6HA1|1|a|C|944
6HA1|1|a|A|945
*
6HA1|1|a|U|1389
6HA1|1|a|U|1390
6HA1|1|a|C|1391
6HA1|1|a|C|1392
6HA1|1|a|C|1393

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9

Chain x

Transfer RNA; tRNA