IL_6HA1_166

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAG*CCAAUC

Length

10 nucleotides

Bulged bases

6HA1|1|a|A|1266, 6HA1|1|a|A|1289

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_166 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.2029

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6HA1|1|a|G|1264
6HA1|1|a|C|1265
6HA1|1|a|A|1266
6HA1|1|a|G|1267
*
6HA1|1|a|C|1286
6HA1|1|a|C|1287
6HA1|1|a|A|1288
6HA1|1|a|A|1289
6HA1|1|a|U|1290
6HA1|1|a|C|1291

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14