IL_6HA1_168

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_168 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1778

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6HA1|1|a|C|1312
6HA1|1|a|G|1313
6HA1|1|a|G|1314
6HA1|1|a|A|1315
6HA1|1|a|U|1316
6HA1|1|a|C|1317
*
6HA1|1|a|G|1338
6HA1|1|a|U|1339
6HA1|1|a|G|1340
6HA1|1|a|A|1341
6HA1|1|a|A|1342
6HA1|1|a|G|1343

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13