IL_6HA1_170

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_170 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1204

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6HA1|1|a|G|1410
6HA1|1|a|C|1411
6HA1|1|a|C|1412
6HA1|1|a|C|1413
*
6HA1|1|a|G|1507
6HA1|1|a|U|1508
6HA1|1|a|A|1509
6HA1|1|a|A|1510
6HA1|1|a|C|1511

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain 7

mRNA

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain x

Transfer RNA; tRNA