IL_6HA1_190

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGG*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_190 not in the Motif Atlas

Geometric match to IL_3LOA_003

Geometric discrepancy: 0.3729

The information below is about IL_3LOA_003

Detailed Annotation

Decoding loop with one bulged A

Broad Annotation

Decoding loop with one bulged A

Motif group

IL_55553.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6HA1|1|a|C|69
6HA1|1|a|G|70
6HA1|1|a|G|71
*
6HA1|1|a|U|98
6HA1|1|a|A|99
6HA1|1|a|G|100

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20