IL_6HCF_002
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACC*GCGUC
- Length
- 9 nucleotides
- Bulged bases
- 6HCF|1|82|C|150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_002 not in the Motif Atlas
- Geometric match to IL_1L9A_005
- Geometric discrepancy: 0.2897
- The information below is about IL_1L9A_005
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6HCF|1|52|G|4
6HCF|1|52|A|5
6HCF|1|52|C|6
6HCF|1|52|C|7
*
6HCF|1|82|G|149
6HCF|1|82|C|150
6HCF|1|82|G|151
6HCF|1|82|U|152
6HCF|1|82|C|153
Current chains
- Chain 52
- 28S ribosomal RNA
- Chain 82
- 5.8S ribosomal RNA
Nearby chains
- Chain G3
- eL8
- Chain N3
- Ribosomal protein L15
- Chain X3
- uL23
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