IL_6HCF_004
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUCAGUAAC*GUGAACAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_004 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.2803
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6HCF|1|52|C|81
6HCF|1|52|U|82
6HCF|1|52|C|83
6HCF|1|52|A|84
6HCF|1|52|G|85
6HCF|1|52|U|86
6HCF|1|52|A|87
6HCF|1|52|A|88
6HCF|1|52|C|89
*
6HCF|1|52|G|95
6HCF|1|52|U|96
6HCF|1|52|G|97
6HCF|1|52|A|98
6HCF|1|52|A|99
6HCF|1|52|C|100
6HCF|1|52|A|101
6HCF|1|52|G|102
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain L3
- eL13
- Chain N3
- Ribosomal protein L15
- Chain Q3
- eL18
- Chain a3
- uL15
- Chain o3
- eL42
Coloring options: