IL_6HCF_005

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

6HCF|1|52|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_005 not in the Motif Atlas

Geometric match to IL_4LFB_007

Geometric discrepancy: 0.2484

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_75289.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6HCF|1|52|C|118
6HCF|1|52|G|119
6HCF|1|52|A|120
6HCF|1|52|A|121
*
6HCF|1|52|U|152
6HCF|1|52|G|153

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain G3

eL8

Chain N3

Ribosomal protein L15

Chain h3

uL29