IL_6HCF_021

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

6HCF|1|52|G|666, 6HCF|1|52|A|667, 6HCF|1|52|C|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_021 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2852

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

6HCF|1|52|G|487
6HCF|1|52|G|488
*
6HCF|1|52|C|665
6HCF|1|52|G|666
6HCF|1|52|A|667
6HCF|1|52|C|668
6HCF|1|52|C|669

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Q3

eL18

Chain r3

eL28